Joseph Nesme's repositories
crAssphage_project
Source code for the crAssphage project
MetagenomeCourse2019
Course material for the metagenomics course
Metagenomics
Metagenome analysis tools
MobileGeneticElementDatabase
Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
parse_diamond
A simple script to parse DIAMOND results in to a data frame
Plaspline
The code for Plaspline workflow as used in the study
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