Beast code in Giters

Joseph Nesme's repositories

Source code for the crAssphage project

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Kraken taxonomic sequence classification system

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Code to run the shiny functions for the MASAME suite

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Course material for the metagenomics course

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Metagenome analysis tools

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Contains a fasta format database of a large variety of mobile genetic elements and an annotation file

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Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

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A simple script to parse DIAMOND results in to a data frame

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The code for Plaspline workflow as used in the study

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A tool to produce sequences with Roche/454 errors to create realistic pseudo-microbial communities.

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Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

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Statistical Analysis of Metagenomic Profiles

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