jmxpearson

julia-for-pythonistas

Materials for the Julia for Pythonistas tutorial at Pydata Carolinas 2016

VinDsl.jl

A fast and furious domain-specific language for variational inference in Julia.

rlfit

Simple Matlab code to fit reinforcement learning models to choice data

duke-julia-ssri

Materials for SSRI's introduction to Julia.

bayesrl

Code to fit Bayesian versions of simple reinforcement learning models

matlab-neurobio

Notes, assignments, and code for Quantitative Neurobiology (Spring 2018).

laf

Implementation of locally adaptive factor processes

DIBS_materials

Teaching materials for DIBS

juliacon-2016-talk

Slides and code for my talk at JuliaCon 2016

physutils

Python classes and functions for electrophysiology data, mostly spikes and LFP

bart_analysis

Analysis code and figure generation for intracranial recording experiment using the balloon analogue risk task

cfos_counts

Simple models of cfos count data.

chang_et_al_2015

Models for Chang et al. 2015

cogneuro_lectures

Lecture notes for the cogneuro graduate class.

DiffableDistributions.jl

Render distributions from Distributions.jl compatible with forward mode automatic differentiation from ForwardDiff.jl

distribution_diff_tests

Integration tests of ForwardDiff.jl and Distributions.jl

Distributions.jl

A Julia package for probability distributions and associated functions.

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

GPflow

Gaussian processes in TensorFlow

hddm

HDDM is a python module that implements Hierarchical Bayesian parameter estimation of Drift Diffusion Models (via PyMC).

hopfield-demo

Demonstration of Hopfield networks for DIBS Bootcamp 2020

jmxpearson.github.io

John's web page

julia

The Julia Language: A fresh approach to technical computing.

METADATA.jl

Metadata for registered Julia packages.

mscope

A microscopic in-browser viewer for electrophysiology data

neural-data-analysis-book

PDMats.jl

Uniform Interface for positive definite matrices of various structures

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

StatsFuns.jl

Mathematical functions related to statistics.

vmftests

internal testing on vMF samplers