Jason Manley's repositories
VGG-Multiple-View-Geometry
A set of MATLAB utilities for multiple view geometry, provided alongside Hartley & Zisserman's "Multiple View Geometry in Computer Vision, Second Edition" (2004). Obtained from http://www.robots.ox.ac.uk/~vgg/hzbook/code/.
conv-autoencoder
a convolutional autoencoder in python and keras.
two-nn-dimensionality-estimator
Implementation of TWO-NN method for estimating intrinsic dimension (Facco et al., 2017, Scientific Reports).
phi_toolbox
Toolbox for practical calculations of integrated information under the gaussian assumption. See their original papers for details: Oizumi et al., 2016, PLoS Computational Biology & Oizumi et al., 2016, PNAS. Obtained from https://figshare.com/articles/phi_toolbox_zip/3203326.
gazetracker
A :eyes:gaze tracking:eyes: application!
readthedocs-sphinx-multiproject-example
An example of how to use readthedocs with sphinx-multi project
brainwide-behavior-encoding
Some more interactive visualizations of the data reported by Stringer & Pachitariu et al. 2019: Spontaneous behaviors drive multidimensional, brainwide activity.
ClogCatcher
AI for detecting stalled blood vessels in Alzheimer's models
student_tix_scanner
keeps you notified about awesome classical student ticket deals in NYC!
BetaRegression.jl
Regression models for beta distributed responses in Julia
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
COVID
COVID-19 visualization and analysis
DeepLabCut
Markerless tracking of user-defined features with deep learning
facemap
matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)
MAxiMuM_processing_tools
Pipeline based on NoRMCorre and CaImAn for segmenting large FOV, volumetric Light Bead Microscopy data.
MotionMapper
Sample implementation of the MotionMapper behavioral analysis algorithms
slurmpy
submit jobs to slurm with quick-and-dirty python
suite2p
cell detection in calcium imaging recordings
VoltageImaging_pipeline
Code sets for processing voltage imaging data
Zebrafish-Tracking
Software for performing offline tracking of zebrafish larvae.