Jinho Kim's repositories
Analysis_angle_coding_in_vS1
Analysis codes for "angle coding in vS1" paper. All in MATLAB
jkSuite2p_match_all_sessions
Using suite2p to match all sessions from the same imaging plane
AllenSDK
code for reading and processing Allen Institute for Brain Science data
angle-discrimination-behavior
Scripts for characterizing behavior in novel angle discrimination task for Kim et al., 2020
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
casignal
calcium signal analysis
jksbx
supplementary files for scanbox by jkim
jkWhisker
HLab whisker analysis
constrained-foopsi
Implementation of the constrained deconvolution spike inference algorithm in Matlab
continuous_time_ca_sampler
The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.
ExperPortHLabTrainingBoxes
Behavior protocols and analysis
gitgoing
Get going with contributing to open source software
jkArduino
arduino codes for behaviors and light control
jkISI
HLab ISI
jkRTWT
codes for real-time whisker tracker
Neural-stretching-in-vS1
Analysis codes for ensemble activity change in vS1 across angle discrimination learning
oopsi
up-to-date code for model-based inference of spike trains from calcium imaging
ROI_detect
Automatic ROI Detection
scikit-learn
scikit-learn: machine learning in Python
session-matching-2p
conversion of 2p images for session matching project
spgl1
A solver for large-scale sparse reconstruction
suite2p
cell detection in calcium imaging recordings
test
test
Useful-Matlab-Functions
A collection of useful Matlab functions that are useful for most situations. Keep these on your path