Jinho Kim's repositories
Neural-stretching-in-vS1
Analysis codes for ensemble activity change in vS1 across angle discrimination learning
AllenSDK
code for reading and processing Allen Institute for Brain Science data
suite2p
cell detection in calcium imaging recordings
jkWhisker
HLab whisker analysis
session-matching-2p
conversion of 2p images for session matching project
jkSuite2p_match_all_sessions
Using suite2p to match all sessions from the same imaging plane
jkTools
miscellaneous tools downloaded and made
angle-discrimination-behavior
Scripts for characterizing behavior in novel angle discrimination task for Kim et al., 2020
jksbx
supplementary files for scanbox by jkim
Analysis_angle_coding_in_vS1
Analysis codes for "angle coding in vS1" paper. All in MATLAB
jkSolo
behavior running & analysis
ExperPortHLabTrainingBoxes
Behavior protocols and analysis
jkArduino
arduino codes for behaviors and light control
jkRTWT
codes for real-time whisker tracker
casignal
calcium signal analysis
jkISI
HLab ISI
test
test
oopsi
up-to-date code for model-based inference of spike trains from calcium imaging
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
continuous_time_ca_sampler
The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.
constrained-foopsi
Implementation of the constrained deconvolution spike inference algorithm in Matlab
scikit-learn
scikit-learn: machine learning in Python
gitgoing
Get going with contributing to open source software
ROI_detect
Automatic ROI Detection
CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
spgl1
A solver for large-scale sparse reconstruction
Useful-Matlab-Functions
A collection of useful Matlab functions that are useful for most situations. Keep these on your path