Jin Roh's repositories
SPIAT
Spatial Image Analysis of Tissues
gcp-for-bioinformatics
GCP Essentials for Bioinformatics Researchers
PyVCF
A Variant Call Format reader for Python.
immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
qupath
QuPath - Bioimage analysis & digital pathology
CytoTree
A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
survClust
An outcome weighted supervised clustering algorithm, designed to classify patients according to their molecular as well as time-event or end point of interest data.
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
ngs-filters
Filters for false-positive mutation calls in NGS
SEQprocess
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
BCL2_analysis
Quantitative BCL2 analysis on DLBCL
bayesNMF
Testing bayesNMF code from the Broad
parallel-elastic-alignment
A script collection and workflow description to parallelize elastic alignment with TrakEM2 on a cluster