jianhong / ATACseqQC

ATAC-seq Quality Control

Home Page:https://jianhong.github.io/ATACseqQC/articles/ATACseqQC.html

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plot correlation is not symmetric

noorisotoudeh opened this issue · comments

Hi Jianhong,
I used plotCorrelation to find out that which of the bam files is highly different from others but surprisingly the out put is not symmetric. I mean as the picture below shows for instance for input6-input5 there is two different colors (one of them is darker). can you please tell me what is wrong?
thanks
Noori

image

Hi Noori,

Thank you for reporting that. The heatmap is rescaled by row. now I fixed this bug by remove the rescale.

Jianhong.