jiangqiuqiuu's repositories
gfastats
A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.
ggstatsplot
Enhancing {ggplot2} plots with statistical analysis 📊📣
RCrashCourse_Book
A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse
OrthoFinder
Phylogenetic orthology inference for comparative genomics
speciation_scripts
Scripts for analysis used for speciation genomics
permute
permutation tests and confidence sets
zelle-python
My solutions to the well know Introduction to Computer Science with Python book by John Zelle. Several years after going through this book, I still recommend it as one of the best examples of computer science pedagogy I've seen to date.
statistical-rethinking
A repository for working through the Bayesian statistics book "Statistical Rethinking" by Richard McElreath.
D1_D2_scripts
Scripts and other material relevant to estimating the D1 and D2 introgression statistics (see Hibbins & Hahn 2019, Genetics).
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
JaltPhylo
Raw scripts for the Jaltomata phylogenomics project. Publication: Wu, M., Kostyun, J. L., Hahn, M. W., & Moyle, L. C. (2018). Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology, 27, 3301-3316.