jhuapl-bio / Basestack

Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major Linux distributions, Mac OS, and Windows 10 or later

https://basestackwebsite.readthedocs.io/en/latest/

jhuapl-bio/Basestack Issues

Multi-File Upload/Processing in Basestack?
Updated a year ago1
Multi files save/cache input
Closed a year ago
Implement Input Validation
Closed a year ago
Create hover over "tooltip" component
Closed a year ago
File Upload Component
Closed a year ago
Prep `refactor/front` branch to be merged with `staging`
Closed a year ago
Upgrading to Vue 3 with Typescript
Closed a year ago
Read patch notes of current version if offline
Closed a year ago
Integrate PID processes as an option for running tools
Closed a year ago
Separate Docker installed and Docker installed but not running status
Closed 2 years ago1
Import Module Does not set Custom
Closed 2 years ago1
Allow customized port listening for both Vue and Node
Closed 2 years ago
Adding demux to mytax
Closed 3 years ago1
Confirm Valid Custom Primer, Basecalling, Barcoding
Closed 3 years ago
Input Custom User Data Save Directory
Closed 3 years ago
Add recursive search Seq_summary File Checking
Closed 3 years ago1
Fix fetched version and available updates
Closed 3 years ago
Input Custom Configuration files into guppy-cpu folder
Closed 3 years ago2
Add Option to input custom primer schemes and protocols, select from list for known ones
Closed 3 years ago1
Add classification Module
Closed 3 years ago1
Status Interval from Backend rather than Frontend
Closed 3 years ago
Add Mytax for influenza analysis
Closed 3 years ago1
Mount 3-6 files for Basestack Consensus Pipeline
Closed 3 years ago
Report Docker Container and System info/stats
Closed 4 years ago
Modify Socket Path for Rootless (docker) users on Ubuntu/AMD64
Closed 4 years ago1
Undefined appears on failure on Fileshare for Hyper-V mode of Docker Desktop for Windows
Closed 4 years ago1
Status interval for docker image and containers returns not running
Closed 4 years ago1
Init WSL2 from Basestack
Closed 4 years ago1
Init Hyper-V from Basestack
Closed 4 years ago1
Sudo/Admin Prompt
Updated 4 years ago
Log all docker build and container stdout to log file
Closed 4 years ago2
Check for sequencer-derived files on bookmark screen
Closed 4 years ago3
meta/run_config.txt not receiving final newline
Closed 4 years ago2
Instantiate Development Webpack watcher
Closed 4 years ago
Prune dangling images removes all non used images by one container
Closed 4 years ago
Show current version vs available version
Closed 4 years ago1
Prevent or remove spaces from manifest for barcode or sample names
Closed 4 years ago1
Provide update status on module install page, show the end completed
Closed 4 years ago
Drop-down options for run_config and manifest
Closed 4 years ago
Add tip for workshop tutorial aws key
Closed 4 years ago
Add a changelog and reccs on the home page
Closed 4 years ago
Allow Docker Pull for pre-built/compiled dockerfiles
Closed 4 years ago
Avoid conflicting GID in docker build if exists on both host machine and docker images
Closed 4 years ago
Rampart Fails to start due to docker consensus image change
Closed 4 years ago
Reduce Basestack Consensus Image Final Build Size
Closed 4 years ago1
Integrate visualization into Resource Monitor
Updated 4 years ago
Fix Unexpected Token on Windows
Closed 4 years ago1