Jesse G. Meyer's repositories
drug-class
comparing drug classification methods
fastai-v3
Starter app for fastai v3 model deployment on Render
pRoteomics
useful functions for analysis of proteomic data
LINCS-general
start working with LINCS transcriptomic data
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
deeplearning
playing with deep learning in R
steem
The blockchain for Smart Media Tokens (SMTs) and decentralized applications.
parseR
parseR: Pipeline for rna-seq analysis in R
runME2
test
DIAumpire_wiff2signalExtraction
python stuff automating the processing going from .wiff file through the signal extraction module
MSGFplus
An MSGF+ interface for R
MSGFgui
A gui overlay and extension for MSGFplus
SUMO-remnant
Collection of files and R scripts analysis of SUMO-remnant MS data
ProteomeDigestSim
A collection of R classes to allow prediction of proteome coverage based on digestion, specifically iterative digestion by MED-FASP
new
for
PyCryptsy
Python binding to the Cryptsy API
PepsuM
a package in [R] for MS-based proteomics data quality control and summary. So far, the package uses two main classes, "proteome" and "pepsum" for containing and working on the proteome sequences and the database search output, respectively. Most of the functions for class pepsum objects are focused on summarizing output from either MS-GFDB or Protein Prospector, but some flexibility exists and eventually I hope the code will be more flexible.