Jessica Chung's repositories
bioconda-recipes
Conda recipes for the bioconda channel.
bionitio-r
Demonstrating best practices for bioinformatics command line tools
biotool
Proverbial biotool implemented in multiple languages
endest
Estimate uterine cycle time using endometrium expression data
rnapipe
Pipeline for RNA-seq
generate_count_matrix
Tool to generate a count matrix for expression data in Galaxy
gvl_image_playbook
Playbook for building the Genomics Virtual Laboratory
hatch
Plot CSV or TSV files on the command line
ifb_workshop
Ansible playbook to install software for the IFB workshop (Summer School Genopole 2017)
MelBioInf_docs
LSCC documentation in markdown format
misc_gvl_documentation
My personal notes for the GVL project and managed GVL servers
pipeline_base
Infrastructure for bioinformatics pipelines based on Ruffus
pylazybam
A pure python lazy BAM parser
qiime2R
Import qiime2 artifacts to R
RNAseq-R
RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/
ruffus
Ruffus is a lightweight python module for running computational pipelines.
scrapers
Various web scrapers
shiny_examples
Examples of R Shiny applications.
test
This is a test repo
tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission