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jerryji1993 / DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Home Page:https://doi.org/10.1093/bioinformatics/btab083

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Transformers not recognized in test run

leannmlindsey opened this issue · comments

commented

I installed according to your directions and then tried to run the fine tuning test according to your instructions. This is the error that I get (see below). It seems that it cannot find the transformer package, though it does exist in the src file.

I noticed that this issue is documented in a previous post but there has been no response so I am posting it again here.

Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
Traceback (most recent call last):
File "/uufs/chpc.utah.edu/common/home/sundar-group2/u1323098/PHAGE_PROJECT/SOFTWARE/DNABERT/src/run_finetune.py", line 37, in
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
from transformers import (
ImportError: cannot import name 'WEIGHTS_NAME' from 'transformers' (unknown location)
srun: error: notch367: tasks 0-15: Exited with exit code 1