DNA BERT : MISMATCH in the saved fine_tuned model and the model loaded after fine tuning

[Ahtisham Fazeel]

Hi, The model saved by fine_tune.py does not have any linear layers

BertModel( (embeddings): BertEmbeddings( (word_embeddings): Embedding(69, 768, padding_idx=0) (position_embeddings): Embedding(512, 768) (token_type_embeddings): Embedding(2, 768) (LayerNorm): LayerNorm((768,), eps=1e-12, elementwise_affine=True) (dropout): Dropout(p=0.2, inplace=False) ) (encoder): BertEncoder( (layer): ModuleList( (0): BertLayer( (attention): BertAttention( (self): BertSelfAttention( (query): Linear(in_features=768, out_features=768, bias=True) (key): Linear(in_features=768, out_features=768, bias=True) (value): Linear(in_features=768, out_features=768, bias=True) (dropout): Dropout(p=0.1, inplace=False) ) (output): BertSelfOutput( (dense): Linear(in_features=768, out_features=768, bias=True) (LayerNorm): LayerNorm((768,), eps=1e-12, elementwise_affine=True) (dropout): Dropout(p=0.2, inplace=False) ) ) (intermediate): BertIntermediate( (dense): Linear(in_features=768, out_features=3072, bias=True) ) (output): BertOutput( (dense): Linear(in_features=3072, out_features=768, bias=True) (LayerNorm): LayerNorm((768,), eps=1e-12, elementwise_affine=True) (dropout): Dropout(p=0.2, inplace=False) ) ) (1): BertLayer( (attention): BertAttention( (self): BertSelfAttention( (query): Linear(in_features=768, out_features=768, bias=True) (key): Linear(in_features=768, out_features=768, bias=True) (value): Linear(in_features=768, out_features=768, bias=True) (dropout): Dropout(p=0.1, inplace=False) ) (output): BertSelfOutput( (dense): Linear(in_features=768, out_features=768, bias=True) (LayerNorm): LayerNorm((768,), eps=1e-12, elementwise_affine=True) (dropout): Dropout(p=0.2, inplace=False) ) ) (intermediate): BertIntermediate( (dense): Linear(in_features=768, out_features=3072, bias=True) ) (output): BertOutput( (dense): Linear(in_features=3072, out_features=768, bias=True) (LayerNorm): LayerNorm((768,), eps=1e-12, elementwise_affine=True) (dropout): Dropout(p=0.2, inplace=False) ) ) (11): BertLayer( (attention): BertAttention( (self): BertSelfAttention( (query): Linear(in_features=768, out_features=768, bias=True) (key): Linear(in_features=768, out_features=768, bias=True) (value): Linear(in_features=768, out_features=768, bias=True) (dropout): Dropout(p=0.1, inplace=False) ) (output): BertSelfOutput( (dense): Linear(in_features=768, out_features=768, bias=True) (LayerNorm): LayerNorm((768,), eps=1e-12, elementwise_affine=True) (dropout): Dropout(p=0.2, inplace=False) ) ) (intermediate): BertIntermediate( (dense): Linear(in_features=768, out_features=3072, bias=True) ) (output): BertOutput( (dense): Linear(in_features=3072, out_features=768, bias=True) (LayerNorm): LayerNorm((768,), eps=1e-12, elementwise_affine=True) (dropout): Dropout(p=0.2, inplace=False) ) ) ) ) (pooler): BertPooler( (dense): Linear(in_features=768, out_features=768, bias=True) (activation): Tanh() ) )

whilst if we try to print the model in evaluate function it is with linear layer?

This is the additional part

( (dropout): Dropout(p=0.2, inplace=False) (classifier): Linear(in_features=768, out_features=2, bias=True) )

Can we say that the saved model is not fine tuned ?