jerryji1993 / DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Home Page:https://doi.org/10.1093/bioinformatics/btab083

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Unable to get motif image

wangyb97 opened this issue · comments

After running it, I got the txt file of the motif and the png image of the weblogo is corrupted. Other formats such as pdf, svg are also not working. I want to know how to modify the codes.

Hi, I want to use the retrained model but want to fine tune based on my data. I want to ask you, how did you prepared the dev.tsv and train.tsv files? I have chip seq peak file from MACS2.

Hi, I only ran the test data. Then there is bug at motif.

Thanks for the reply. Yes, I am also not getting the motif image on the test data.

I want able to make it using
https://weblogo.threeplusone.com/manual.html#CLI