jermp

data_compression_course

A Crash Course on Data Compression.

pthash

Fast and compact minimal perfect hash functions in C++.

tongrams

A C++ library providing fast language model queries in compressed space.

sshash

A compressed, associative, exact, and weighted dictionary for k-mers.

autocomplete

Efficient and effective query auto-completion in C++.

lphash

Fast and compact locality-preserving minimal perfect hashing for k-mer sets.

fulgor

Fulgor is a fast and space-efficient colored de Bruijn graph index.

mutable_rank_select

A SIMD-based C++ library providing rank/select queries over mutable bitmaps.

interpolative_coding

A flexible and efficient C++ implementation of the Binary Interpolative Coding algorithm.

cmd_line_parser

Command line parser for C++17.

psds

Efficient Prefix-Sum data structures in C++.

s_indexes

Universe-sliced indexes in C++.

tongrams_estimation

A C++ library implementing fast language models estimation using the 1-Sort algorithm.

essentials

Essential C++ utilities.

rdf_indexes

Fast and Compressed RDF Indexes in C++.

sshash-lite

K-mer membership queries in compressed space.

sketch

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

minimizers

A collection of minimizer-based sampling algorithms.

elias_fano

Elias-Fano in C++

essentials-cmake-test

Example project showing how to integrate essentials with CMake.

kmeans

A small, header-only, parallel implementation of kmeans clustering for arbitrary-long byte vectors.

curriculum_vitae

Curriculum Vitae et Studiorum.

FQFeeder

Self-contained, multi-threaded fasta/q parser

fulgor-benchmarks

Benchmarks and evaluation scripts for the Fulgor index.

ggcat

Compacted and colored de Bruijn graph construction and querying

github_cplusplus_theme

A SublimeText3 color theme for C++ that looks like the one of GitHub.

jermp

Config files for my GitHub profile.

jermp.github.io

My static personal web-site.

metagraph-workflows

pufferfish2