Jeffrey Pullin's repositories
cardelino
Clone identification from single-cell data
coloc
Repo for the R package coloc
docs
Online documentation for Stan language and platform
greta
simple and scalable statistical modelling in R
Bernadette
Bayesian analysis of infectious disease transmission dynamics, with a particular focus on Coronavirus Disease 2019 (COVID-19)
dirtree-elections
An R package for performing bayesian audits on ranked-choice elections with a Dirichlet-Tree prior distribution.
dplyr
dplyr: A grammar of data manipulation
eda
Data exploration to determine how much of variability in total UMIs is biologically drive
fishflux
A package to model elemental fluxes in fish
gastempt
A package and a Shiny web application to create simulated gastric emptying data, and to analyze experimental gastric emptying data using population fit with R and package nlme. Use the Docker image (https://hub.docker.com/u/dmenne) for easy installation. Documentation:
glmGamPoi
Fit Gamma-Poisson Generalized Linear Models Reliably
ppcseq
Posterior predictive check for bulk RNA sequencing differential abundance analyses
presto
Fast Wilcoxon and auROC
rstan
RStan, the R interface to Stan
rstantools
Tools for Developing R Packages Interfacing with Stan
smash-fork
Fork of smashpy for research purposes
stan
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
StanMoMo
Bayesian Mortality Modeling with Stan
tidyr
Easily tidy data with spread and gather functions.