Javier Díez Pérez's starred repositories
pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
qiime_test_data
Test input and output for QIIME scripts.
Ion-Variant-Hunter
Variant Calling for Ion Torrent