jdiez

followers

following

stars

DS

Spain

https://www.linkedin.com/in/javier-d%C3%ADez-p%C3%A9rez-71b17318

Javier Díez Pérez's starred repositories

mendelscan

Analyze exome data for Mendelian disorders. Still in alpha-testing.

Language:Java1000

PyLaTeX

A Python library for creating LaTeX files

Language:PythonMIT221300

tinkerer

Python blogging engine

Language:PythonNOASSERTION30500

julia

The Julia Programming Language

Language:JuliaMIT4491000

MGA

The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.

Language:JavaMIT2500

PyVCF

A Variant Call Format reader for Python.

Language:PythonMIT200

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

Language:PythonNOASSERTION300

bedtools-python

A Python interface to the BEDTools API using Cython

Language:C2800

bits

BITS: Binary Interval Search

Language:C++GPL-2.02300

rstudio

RStudio is an integrated development environment (IDE) for R

Language:JavaNOASSERTION459000

dplyr

dplyr: A grammar of data manipulation

Language:RNOASSERTION468400

fluff

Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.

Language:PythonMIT6800

isaac_variant_caller

This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka

Language:C++NOASSERTION3800

isaac_aligner

Isaac Genome Alignment Software

Language:C++NOASSERTION3700

cgat

Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps

Language:PythonBSD-3-Clause12400

vcfnp

Load numpy arrays and HDF5 files from VCF (variant call format)

Language:PythonMIT3100

fastinterval

Simple interval class for fast fasta access

Language:Python1000

cutadapt

Cutadapt removes adapter sequences from sequencing reads

Language:PythonMIT50100

scikit-learn

scikit-learn: machine learning in Python

Language:PythonBSD-3-Clause5870900

ngsutils

Tools for next-generation sequencing analysis

Language:PythonBSD-3-Clause8800

PyVCF

A Variant Call Format reader for Python.

Language:PythonNOASSERTION200

swirl_OLD

We've moved! See README below for more info.

Language:R4700

dgidb

Rails frontend to The Genome Institute's drug gene interaction database.

Language:RubyMIT9500

scythe

A 3'-end adapter contaminant trimmer

Language:CMIT9000

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Language:PythonBSD-3-Clause4248800

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

Language:TeX63000

jsonfield

A reusable Django model field for storing ad-hoc JSON data

Language:PythonMIT116300

tablefactory

Easily create HTML, spreadsheet, or PDF tables from common Python data sources

Language:Python1800

django-rest-framework

Web APIs for Django. 🎸

Language:PythonNOASSERTION2776100

rubra

Infrastructure code to support DNA pipeline

Language:PythonMIT3800