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Javier Díez Pérez (jdiez)

jdiez

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17

followers

87

following

203

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Company:DS

Location:Spain

Home Page:https://www.linkedin.com/in/javier-d%C3%ADez-p%C3%A9rez-71b17318

Twitter:@e_cume

Github PK Tool:Github PK Tool

Javier Díez Pérez's starred repositories

neural-networks-and-deep-learning

Code samples for my book "Neural Networks and Deep Learning"

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fuzzywuzzy

Fuzzy String Matching in Python

Language:PythonLicense:GPL-2.0Stargazers:9166Issues:259Issues:187

docker-osx-dev

A productive development environment with Docker on OS X

Language:ShellLicense:MITStargazers:1433Issues:51Issues:149

pykka

🌀 Pykka makes it easier to build concurrent Python applications.

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bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Language:PythonLicense:MITStargazers:979Issues:87Issues:3049

toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

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bokeh-notebooks

Interactive Web Plotting with Bokeh in IPython notebook

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Jellyfish

A fast multi-threaded k-mer counter

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vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

Language:GoLicense:MITStargazers:350Issues:26Issues:141

vbench

vbench: A tool for benchmarking your code through time, for showing performance improvement or regressions

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ipython-cluster-helper

Tool to easily start up an IPython cluster on different schedulers.

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genstats

Statistics course for JHU Genomic Data Science Sequence

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HaPy

Haskell bindings for Python

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MOODS

MOODS: Motif Occurrence Detection Suite

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shorah

Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)

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READemption

A pipeline for the computational evaluation of RNA-Seq data

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EMu

An Expectation-Maximization algorithm to infer mutational signatures

Language:C++License:GPL-3.0Stargazers:25Issues:4Issues:4

gene.iobio

An iobio app for examining gene variants

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inenv

Simple Project Virtualenv Management and Workon replacement

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pygis

Python GIS tools

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machine-learning

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VariantQC

Variant quality checking scripts.

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readphaser

experimental read phasing from HapCut

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myflq

My Forensic Loci queries

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isoSegmenter

A program for segmenting genomes into isochores

Language:PythonLicense:GPL-3.0Stargazers:3Issues:3Issues:4

diversity-score

Compute diversity scores for all individuals with a variant allele

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splicing_analysis_pipeline

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googva

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esd

An R-package desinged for climate and weather data analysis, empirical-statistical downscaling, and visualisation.

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SICER

SICER for ChIP-seq analysis

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