jdiez

PyVCF

A Variant Call Format reader for Python.

shiny

Easy interactive web applications with R

awesome-data-leadership

A curated list of awesome posts, videos, and articles on leading a data team (small and large)

Awesome-Product-Management

A curated list of Product Management Resources :seedling:

BUS_notebooks_python

curso-qgis-python

dgi-db

Rails frontend to The Genome Institute's drug gene interaction database.

django-rest-framework

Awesome web-browseable Web APIs.

ESRI_M_GIS

gatk-protected

GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

gemini

a lightweight db framework for disease and population genetics.

geocompr

Forthcoming book on geographic data with R

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

jdiez.github.io

Personal website

matplotlib

matplotlib: plotting with Python

ngsutils

Tools for next-generation sequencing analysis

oncotator

Large-file conversion with http://www.broadinstitute.org/oncotator

pbt

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

rq

Simple job queues for Python

rubra

Infrastructure code to support DNA pipeline

seqtk

Toolkit for processing sequences in FASTA/Q formats

simpsons-in-css

Simpsons characters in pure CSS

tablefactory

Easily create HTML, spreadsheet, or PDF tables from common Python data sources

vcf_importer

VCF Importer: Converts a VCF file into a Variants GTable object

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vcfnp

Load numpy arrays from VCF (variant call file)

VcfPythonUtils

python utilities to work with Variant Call Format files (VCF)

You-Dont-Know-JS

A book series on JavaScript. @YDKJS on twitter.