JCVI-Cloud

galaxy-tools-vcr

The .xml files for the tools presented on the customized Galaxy interface of JCVI's Viral Cloud Resource (VCR). These should replace the default Galaxy .xml before bundling.

galaxy-tools-prok

Modified Galaxy interface for the Prok pipelines

SISPA-related

Cloud-Protocols

Hacks for working with images and other hacks on Eucalyptus and Amazon clouds

biocloudcentral

Easily launch CloudMan and CloudBioLinux clusters with no manual configuration

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

VICVB

Genome browsing with JBrowse for JCVI VIGOR output inside Galaxy

jbrowse

Modern JavaScript-based Genome Browser

OSQA-Eucalyptus

GSC Cloud documentation site running on OSQA system on Eucalyptus cloud.

METAREP

METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics

OSQA-Heroku

A repository that will get you running OSQA on Heroku quickly.

mi-deployment

Clone of Enis Afgan's mi-deployment (from bitbucket)

cloudman

clone of main hg cloudman repository https://bitbucket.org/galaxy/cloudman in order to add eucalyptus functionality

rsanka-repo

repository for testing my scripts

CloudVIGOR

Build Scripts for creating a CloudVIGOR distribution image(s)

mi-deployment-dirty

some wild cloud explorations (still learning git so dunno want to mess the teams repo)

VIGOR

JCVI's viral annotation pipeline

S3curl

Wrapper for curl for operations on S3 and Eucalyptus Walrus (adapted from http://aws.amazon.com/code/128 )