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jb2605

jb2605

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developer-roadmap

Interactive roadmaps, guides and other educational content to help developers grow in their careers.

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Oxicams-quantum-data

Input and Output files of Oxicams and their metabolites

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free-programming-books

:books: Freely available programming books

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GWA_tutorial

A comprehensive tutorial about GWAS and PRS

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graphein

Protein Graph Library

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rush

A cross-platform command-line tool for executing jobs in parallel

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htslib

C library for high-throughput sequencing data formats

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DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

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ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

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nucleus

Python and C++ code for reading and writing genomics data.

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getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

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MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

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cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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deep_gcns_torch

Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021): https://www.deepgcns.org

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scanpy

Single-cell analysis in Python. Scales to >1M cells.

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gatk

Official code repository for GATK versions 4 and up

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Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

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awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

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deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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molgraph

Graph neural networks for molecular machine learning. Implemented and compatible with TensorFlow and Keras.

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homebrew-cheminformatics

Cheminformatics formulae for the Homebrew package manager

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genui

The backend services of the GenUI framework. The backend provides the REST API used for molecular generation, QSAR modelling and chemical space visualization.

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CheMixNet

Mixed DNN Architectures for Predicting Properties using Multiple Molecular Representations

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icsg3d

3-D Inorganic Crystal Structure Generation and Property Prediction via Representation Learning (JCIM 2020)

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cmiles

Generate canonical molecule identifiers for quantum chemistry database

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mofid

A system for rapid identification and analysis of metal-organic frameworks

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protwis

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

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stk-vis

A cross-platform application for visualization of molecular databases.

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cdkbook

Groovy Cheminformatics with the Chemistry Development Kit

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