Sequence similarity percentage
jaumebonet opened this issue · comments
While the way it currently works is OK for the IDENTITY matrix, information becomes weird for other similarity matrices, specially when a sequence score can become negative.
Solution: Let's change it so that _perc reports the amount of positively scored residue alignment.
Fixed in commit efc51d9.
generates columns for raw and percentage score, identities, positives and null/negatives.