Jason L Weirather's repositories
pythologist
Read and analyze exports of microscopy image data.
good-neighbors
Identify neighborhoods based on local cell populations.
cio-wsi-segmentation
Run whole slide segmentation
comfyui-image-api
Host an API to execute ComfyUI Flux-dev image generation workflows
deepcell-tf
Deep Learning Library for Single Cell Analysis
deepcell-toolbox
Data processing tools associated with deepcell
ome-slicer
Perform basic operations like crop on OME tiff files and preserve structure
tiff-inspector
A package for examining the structure and contents of the metadata contained within tiff files
pythologist-reader
Reading functions to generate projects for storage and producing dataframes suitable for pythologist analysis
azure-vault-loader
A tool for loading secrets from azure key vault secrets onto remote machines holding proper credentials.
bioformats2raw
Bio-Formats image file format to raw format converter
comfy-cli
Command Line Interface for Managing ComfyUI
fediverse-sandbox
Spin up multiple activitypub servers to test the fediverse
gonk-diffusers-api
Python API for transforming text into vivid images using Stable Diffusion, with GPU support and concurrency control.
jason-weirather.github.io
Make a cool portfolio repo
ktistec
Single user ActivityPub (https://www.w3.org/TR/activitypub/) server.
ome-model
OME model (specification, code generator, implementation)
ome-schema
A fork of the Open Microscopy Environment (OME) schema
promptfoo
Test your prompts. Evaluate and compare LLM outputs, catch regressions, and improve prompt quality.
pythologist-schemas
Check assumptions for input types prior to ingestion.
pythologist-test-images
Images for use in unit tests etc
raw2ometiff
Raw format to OME-TIFF converter
snac-fork
A fork of snac2 - A simple, minimalistic ActivityPub instance
stained-glass
A tiny server that just talks to AI image generators
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.