Jaret Karnuta's repositories
CartilageMachineLearning
Machine learning Jupyter notebook for modeling MCID and SCB outcomes
ImplantDetector
Detects implants in AP x-rays with high accuracy
baseballr
A package written for R focused on baseball analysis. Currently in development.
pybaseball
Pull current and historical baseball statistics using Python (Statcast, Baseball Reference, FanGraphs)
pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks.
SnpManhattanPlot
R script for generating Manhattan plots that demonstrate count density on the y-axis instead of -log(p_value) that most manhattan plot scripts use
SPARCS-Downloader
Utility script to make downloading, formatting, and pruning data downloaded from the New York SPARCS database easy as pie
MLPvsDNN
Comparison of fully connected, traditional multilayer perceptron networks and DenseNet architecture using patient-level data
RocPlottingR
R file for plotting publication-quality Receiver Operating Characteristic Curves
Table1R
Simple file to turn a CSV file into a customizable table 1 for publication
LivSim-Codes
LivSim Simulator along with Data Processing Codes
DenseNet
DenseNet implementation in Keras
svaba
Structural variation and indel detection by local assembly
Lerner-Dash
Chrome extension for CCLCM students
translators
Zotero Translators
SeerTreemapOverview
Javascript / PHP application to be viewed over the web. Accepts a SEER json and gives the user the ability to visualize the relationships between different cancer types, subtypes, etc. and survival rate
SeerJavaWrapper
Wraps SEER data into serialized java objects, allowing in situ calculations without RAM storage problems.
ParseSeer
Parses SEER data and returns name, child dictionary of hierarchy. For SYBB 421 final
CmsPaymentMap
A web-based javascript visualization for viewing the Centers for Medicare and Medicaid Services Y2014 aggregated data
YouTunes
Third (and final) rewrite of the youtube-dl java GUI package
SPROXFitting
SPROXFitting is a data processing suite developed for processing SPROX (Stability of Proteins from rates of OXidation) data. This was developed for the Fitzgerald lab at Duke University.