jaeho3690 / LIDC-IDRI-Preprocessing

This is the preprocessing step of the LIDC-IDRI dataset

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Installation help

aa-magic opened this issue · comments

Hi,
First of thank you so much for the effort put into the guide you wrote up and all this code! I know basically nothing about pre-processing and this is really helping me out.
To start, I wanted to just get your preprocessing code working. I created a new anaconda env and downloaded all the necessary packages. Sadly pylidc available so I downloaded pip in anaconda and used pip to install the package.

Now when I run my code, I'm not getting any errors about imports anymore, but I get this error:

AttributeError: 'NoneType' object has no attribute 'cluster_annotations'

For this line:
nodules_annotation = scan.cluster_annotations()

Is this a pylidc installation issue?
Also can you please share exactly how you downloaded the packages (did you install all of them through pip?) so I can try that instead?

Thanks!

I fixed the issue - for anyone else - pylidc is installed correctly, its an issue of the correct paths in the config file among other bugs based on file paths you just have to fix as you get errors in terminal.