BioTools

Some scripts for analysis of protein sequences

def example(test)
	return test

Dependencies

It is necessary to install the Numpy, MatPlotLib and BioPython for some of these scripts to work.

pip install numpy matplotlib BioPython

Download/clone the package. In the rootdir of the package run the setup.py script.

python setup.py install

pip install BioTools

Contains hydropathy tables.

Scripts for incorporation into a Django web application

Some scripts for dealing with NMR related data

Scripts for converting Bruker NUS sampling schedules to Omega compatible format and vice-versa.

###Example usage:

from NMR_Tools import nus

nus.Omega2Bruk('nuslist1','nuslist2')

will output a bruker format nus list for use with hmsIST

nus.Bruk2Omega('nuslist')

will convert bruker nuslist to Omega format

Scripts for analysis of ¹⁵N-TRACT data. Fitting and effective correlation time (τ_c) along with estimation of apparent molecular weight.

###Example usage:

from NMR_Tools.tract import tract_tauc, Mw_from_Tauc
    
tau_c = tract_tauc.tauc(h_field,two_eta_xy)

h_field = field strength in Hz, two_eta_xy = cross-correlated relaxation rate (2η_xy) (s^-1) calculated from ¹⁵N-TRACT data.

mw    = Mw_from_Tauc(r_w,eta,T,tau_c,rho)

r_w = hydration radius (should be between 1.6 - 3.2 Å), eta = viscosity, tau_c= τ_c (s), rho = 0.73e-6 m³g^-1.