iyhaoo

DISC

A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning.

deep-image-prior-tensorflow

deep-image-prior-tensorflow(inpainting)

STAR2count_by_starcode.py

directly output starcode counts from TagReadWithGeneExon result

camelyon16_yh

dca

Deep count autoencoder for denoising scRNA-seq data

deepimpute

An accurate and efficient deep learning method for single-cell RNA-seq data imputation

deepimpute_paper_scripts

DISC_data_availability

Contents of https://github.com/iyhaoo/DISC/tree/master/reproducibility/data

docs

TensorFlow documentation

dropSeqPipe

A SingleCell RNASeq pre-processing pipeline built on snakemake

fancyimpute

Multivariate imputation and matrix completion algorithms implemented in Python

geoDataDownload_python3

a simple python script to download geo data by gse NOs or srr ftpUrls

inceptionv3_based_classfier

inceptionv3_based_classfier

NCBI_spider

SAVERX

R package for transfer learning of single-cell RNA-seq denoising

scImpute

Accurate and robust imputation of scRNA-seq data

scRNA-AHCA

Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs

scVI

Deep generative modeling for single-cell transcriptomics

starcode

All pairs search and sequence clustering

UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

URSM-master_edited

re_edit from original scUnif

VIPER