Bryan Brown's repositories
microfiltR
accessory functions for processing microbial community data
crAssphage_M186D4_analyses
The data and scripts required to reproduce the 16S analyses used in Brown et al. 2019
gcc-12-branch
GCC 12 for Darwin with experimental Arm64 support. Current release 12.2-darwin-r0 [August 2022]
GutMicrobes_analyses
The data and scripts required to reproduce the analyses used in Brown et al. 2019 Gut Microbes
itsmisterbrown.github.io
personal site with wordpress
marker_gene_dataset_merging_functions
R functions for the merging of multiple marker gene datasets as phyloseq-class objects. Several mathematical transformations and standardizations are performed during merging to preserve relative ratios of taxa; transformations are user-specified.
updated_16S_dbs
updated 16S databases for marker gene taxonomic assignment