Beast code in Giters

Issar Arab's repositories

CToxPred

Comprehensive cardiotoxicity prediction tool of small molecules on three targets: hERG, Nav1.5, Cav1.2

Language:Jupyter NotebookMIT18 10

PEvoLM

Protein Sequence Evolutionary Information Language Model

Language:PythonMIT1200

EPSAPG

EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST

Language:C++MIT1000

CToxPred2

Comprehensive user-friendly cardiotoxicity prediction tool of small molecules on three targets: hERG, Nav1.5, Cav1.2

Language:Jupyter NotebookMIT4 10

SCMS

Spectra Complexity Metric System (SCMS): Giving the path to a Java project, the tool compiles a taxonomy of all class or all method level complexity metrics based on statement level metrics and more.

Language:JavaMIT2 10

The repository shows the power of SQL in creating parametrized SQL scripts which might allow you to combine similar, yet different, scripts to perform tasks in one single SQL script based on input parameters.

Language:TSQL100

ToxTree

ToxTree is a descriptor-based machine learning model to predict hERG and Nav1.5 cardiotoxicity of a molecular compound at the outset of drug development process.

Language:Jupyter NotebookMIT1 10

ANN-SoLo

Spectral library searching using approximate nearest neighbor techniques.

Language:Jupyter NotebookApache-2.0000

casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Language:PythonApache-2.0000

ML-Results-Analysis-Notebooks

This repository showcase code for visualization and analysis to reproduce the presented results in the paper for semi-supervised rescoring in ANN-SoLo

Language:Jupyter NotebookApache-2.0020

ProjectManagementReportingSoftware

This repository contains a set of useful python scripts implemented to support the work of project managers/team leads keeping track of their teammembers closed taks, vacation and absences declarations, and time spent in each task/project. The scripts pull customized reports from the 3 team managment web services: ClickUp, Toggl, and TimeButler.

Language:Python010

SeqVec

Modelling the Language of Life - Deep Learning Protein Sequences

MIT000

Spectrum_Decoy_Construction

This notebook showcase how a decoy can be generated using the Shuffle_and_Reposition strategy.

Language:Jupyter NotebookMIT000

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