std::bad_alloc when using "-a anchorgotoh"
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I have Oxford Nanopore data of a bacterium. I am mapping the reads to an assembly of the same identical strain to check the assembly.
If I use the standard alignment alogrithm (anchor) all works fine.
However, if I use "anchorgotoh" it get the exception "std::bad_alloc". I have to say that we have a lot of really long reads (>400kb).
Is this a known problem? How can I help to debug?
Same problem with "sggotoh"