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isovic / graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

Home Page:https://github.com/lbcb-sci/graphmap2

Repository from Github https://github.comisovic/graphmapRepository from Github https://github.comisovic/graphmap

illegal instruction - core dumped

aechchiki opened this issue · comments

commented

Hi @isovic !

I was trying the splice-aware version of graphmap and followed the build instructions.

This is my command:
/home/aechchik/software/graphmap/bin/graphmap-not_release align -x rnaseq -r ../../ref/ref_genome.fa -d reads.fasta -o out.sam

But I get the error:

[11:53:00 BuildIndexes] Loading reference sequences.
[11:53:02 SetupIndex_] Building the index for shape: '11110111101111'.
Illegal instruction (core dumped)

Do you know where it could come from?

Best
Amina

commented

Ok sorry @isovic nevermind, I just tried it on a different server and it is running now. Might just had not enough memory to build the index in the other machine in fact - kind of what reported in #57 in fact.

Best,
Amina