Code I wrote for my time at Dr. John Calarco's lab in the summer of 2021, between first and second year undergraduate.
Working remotely, I analyzed previously collected RNA read data from C. elegans tissue samples to identify differentially expressed genes. Some of the summary files have been uploaded, but the focus of this repository is demonstrating the methods, libraries, and scripts used rather than the specific conclusions reached.
Work was performed on the Compute Canada Niagara server with large files and datasets. These cannot be uploaded to Github, but I have placed files explaining their absence. The directory structure on Niagara differs from what was uploaded here (with many more subdirectories holding obselete code). This causes inconsistent filepaths in the R files.