irliampa

IsoXpressor_docker

aop_bmdt_nanocommons

aop_nm_grouping

bamtofastq

Converts bam or cram files to fastq format and does quality control.

conumee

conumee_2

deeplearning-biology

A list of deep learning implementations in biology

dnaalnqc

ICGC-ARGO workflow for DNA-Seq alignment QC

file_splitter

IntPROAST

A wrapper to the PROAST R package by RIVM http://www.rivm.nl/en/Documents_and_publications/Scientific/Models/PROAST

IsoXpressor

A tool to assess transcriptional activity within isochores

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

NPM-sample-qc

reference implementation of GA4GH WGS Quality Control Standards

quality-control-wgs

Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

raredisease

Call and score variants from WGS/WES of rare disease patients.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Selma

Germline Variant Calling Pipeline built in Snakemake

unicorn_project

A very rare project

wgs-sample-qc

visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results