Ioannis Magkanaris's repositories
BluePyOpt
Blue Brain Python Optimisation Library
BRIAN-to-C-port
Porting a neuron simulation based on AdEx point neurons from BRIAN to C++. Goal of this repo is to implement the simulation using different programming models for execution in CPUs and GPUs and their comparison
bsb
The Brain Scaffold Builder
coolpp20
A collection of cool and useful features introduced in C++20
cornerstone-octree
Local and distributed octrees based on Morton codes with halo discovery and exchange with a 3D collision detection algorithm
docker-centos-intel
Dockerfile that installs INTEL compilers and NEURON using CentOS 8
llvm-nvvm-test
Testing LLVM IR compilation for GPU execution
dbbs-mod-collection
Glia package containing all our mod files
elif-madexp
Energy-based neuronal models (eLIF and mAdExp)
GHEX
Generic exascale-ready library for halo-exchange operations on variety of grids/meshes
GPU_examples
Simple GPU examples in CUDA, OpenACC or OpenMP to showcase performance optimizations
gpuhackathon
CoreNEURON openacc to openmp offloading explorations
gridtools
Libraries and utilities to develop performance portable applications for weather and climate.
gt4py
Python library for generating high-performance implementations of stencil kernels for weather and climate modeling from a domain-specific language (DSL).
gt_ternary_fix
Reproducer for gridtools ternary operator fix
llvm-ir-tutorial
Small example for LLVM IR tutorial
MVDTool-wheels
Wheels demo
netpyne
A python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.
nrn
NEURON Simulator
nrntraub
Traub 2005 model for coreneuron
stencil_benchmarks
collection of basic stencil benchmarks to profile multiple computing architectures
testEigen
simple test for compiling eigen with different compilers