iobio's repositories
gene.iobio
Gene.iobio vue
bam.iobio.io
http://bam.iobio.io
clin.iobio
Clin.iobio - Workflow and reporting for iobio variant analysis pipeline
rnasplice.iobio
Visualize short-read RNA splice events
diff-express.viz
An application for genetic differential expression dataset visualization.
gene.model.db
Import refseq gene model (gff3) to sqlite3 db for gene.iobio and update with xref and canonical infor for transcripts
gene_phenotype_associations
Python scripts to load gene-to-phenotype db to supply gene to HPO terms (phenotypes) and gene to disease assocations.
geneinfo.db
This is project for rebuilding gene model by python
patient_portal
This is a patient portal project for Calypso and UDN
pheno-plus
SMART on FHIR EMR project for retrieving Human Phenotype Ontology terms directly from medical record notes.
pheno-plus-whitelist
A background service that keeps a whitelist json for our pheno+ applicaiton up to date. This is a service for testing only.
pheno_matcher_be_rust
Backend for the SimPheny project. Implemented in Rust for speed.
phenomatcher
iobio version of phenomatcher tool
Phenotype-extractor
Extract phenotypes/ conditions from clinical notes
SimPheny.iobio
A web application for patient to patient phenotype matching.
sv.iobio
structural variant visualization application
sv.iobio.be
Backend services for testing & stand alone service to sv.iobio