Ingie Hong's repositories
retinotopy
Code for ISI image acquisition, stimulus presentation, and mouse visual area segmentation.
Linelength-spike-detector-MATLAB
Detects abnormal events in brain wave data (namely, interictal spikes in EEG data) using a linelength transform algorithm.
vhlab_mltbx_toolbox
General purpose Matlab toolbox for neuroscience research created by Van Hooser lab and collaborators
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
stringtie
Transcript assembly and quantification for RNA-Seq
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Gogo-stages
Go^2-stages : Head-fixation stages for longitudinal in vivo two photon-imaging with submicron accuracy
DeepLabCut
Markerless tracking of user-defined features with deep learning
FaceMap
matlab GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
gerardus
Computational biology and medical image processing scripts and programs