iliapopov17

followers

following

stars

Russia

https://iliapopov17.github.io

Organizations

PopovIILab

Ilia Popov's starred repositories

python-machine-learning-book

The "Python Machine Learning (1st edition)" book code repository and info resource

Language:Jupyter NotebookMIT12233 798 56

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

zotero-gpt

GPT Meet Zotero.

Language:TypeScriptAGPL-3.04979 12 294

napari

napari: a fast, interactive, multi-dimensional image viewer for python

Language:PythonBSD-3-Clause2179 46 3009

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

Language:RNOASSERTION1325 182 41

skimr

A frictionless, pipeable approach to dealing with summary statistics

Language:HTML1108 32 262

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

Language:Perl823 47 646

MingCute

Carefully Designed Icon Library. MingCute is a set of simple and exquisite open-source icon library. Whether you're a designer or a developer, it's perfect for use in web and mobile.

Language:CSSApache-2.0811 5 54

practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

Language:Jupyter NotebookMIT797 45 10

learning-bioinformatics-at-home

resources for learning bioinformatics

MIT789 440

pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Language:PythonMIT728 9 43

OrthoFinder

Phylogenetic orthology inference for comparative genomics

Language:PythonGPL-3.0684 27 894

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

Language:PerlGPL-2.0468 30 581

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

Language:PerlGPL-2.0363 29 199

panaroo

An updated pipeline for pangenome investigation

Language:PythonMIT262 12 266

biopython_workshop

A basic introduction to Biopython, intended for a classroom based workshop

Language:PythonNOASSERTION211 21 1

humann

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

Language:PythonNOASSERTION165 14 41

single-cell-training

SIB course on single cell transcriptomics by mostly using the Seurat pipeline

Language:RCC-BY-4.076 6 42

PanACoTA

PANgenome with Annotations, COre identification, Tree and corresponding Alignments

Language:PythonAGPL-3.071 6 36

customized_upset_plots

Make customized upset plots: from raw data to plots

CC0-1.061 3 2

kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Language:PythonMIT47 3 21

PythonTUBS

Python introduction for life scientists

Language:PythonGPL-3.043 20

FriPan

Interactive, web tool for exploring pan-genome of bacterial strains

Language:JavaScriptMIT43 8 38

workshops

Bioconnector Workshops

Language:RNOASSERTION32 3 46

APPLS

Applied Python Programming for Life Scientists

Language:PythonGPL-3.025 1 1

BI-ml-2024

Course "Machine learning" in Bioinformatics Institute

Language:Jupyter Notebook1300

rbiom

Interact with Biological Observation Matrix files.

Language:RNOASSERTION12 7 19

tidy_stats

Анализ данных и статистика в R

Language:PythonGPL-3.011 2 1

repseq-annotation-tutorial

📝 [Tutorial] RepSeq data mining basics in R

Language:TeXNOASSERTION10 3 1

proteinortho_curves

Draw pan- and core-genome curves from proteinortho output

Language:RGPL-3.08 2 2