IdoBar / CNVpytor_binder

Binder repo to analyse CNVpytor results

Analysis of CNVpytor results (Binder-ready)

This repository was developed for the interactive analysis and visualisation of genome-wide copy number variations (CNV) from Whole-Genome-Sequencing (WGS) data using CNVpytor [1].

Instructions

Launch Binder with this repository by clicking on this badge - , then follow the instructions in the CNVpytor repository.
An example Jupyter notebook is available in the Example folder. All the required packages and data files are “bound” in the repository and you can start working straight away.

For more details and instructions how to setup a similar repository, please visit From Zero to Binder in R!

1. Suvakov M, Panda A, Diesh C, Holmes I, Abyzov A. CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing. GigaScience. 2021 Nov 1;10(11):giab074. https://doi.org/10.1093/gigascience/giab074