UC, San Diego Trey Ideker Lab

UC, San Diego Trey Ideker Lab's repositories

DrugCell

A visible neural network model for drug response prediction

Language:PythonMIT125 11 25

KEGGscape

A Cytoscape app for importing KGML(KEGG pathway XML)

Language:JavaApache-2.021 13 24

heat-diffusion

Language:Python12 8 1

llm_evaluation_for_gene_set_interpretation

Code space for 'Evaluation of large language models for discovery of gene set function'

Language:Jupyter NotebookMIT10 8 2

cy-net-share

A simple web application to share network files generated with Cytoscape.

Language:JavaScript9 7 16

nest_vnn

NeST-VNN repo

Language:PythonMIT9 9 3

web.cytoscape

New version of cyNetShare

Language:JavaScriptMIT7 6 1

cellmaps_pipeline

Language:PythonMIT4 5 3

large-graph-renderer

Webpack version of LGR

Language:TypeScriptMIT2 7 1

multitask_vnn

Multi-task learning VNN

Language:PythonMIT2 60

cdhidef

Language:PythonNOASSERTION1 6 1

cellmaps_annotate_hierarchy

Language:Jupyter NotebookMIT1 70

cellmaps_utils

Language:PythonMIT1 6 6

GSAI

Language:TypeScript100

network-viewer

Language:TypeScript1 40

qfieldlayout

Language:PythonNOASSERTION1 70

cellmaps_coembedding

Language:PythonMIT05 3

cellmaps_hierarchyeval

Code for hierarchy evaluation

Language:PythonMIT03 2

cdapsutil

Language:PythonBSD-3-Clause02 1

cdiquerygenestoterm

Language:PythonNOASSERTION050

cellmaps_generate_hierarchy

Language:PythonMIT05 6

cellmaps_image_embedding

Language:PythonMIT05 3

cellmaps_imagedownloader

Language:PythonMIT05 7

cellmaps_ppi_embedding

Language:PythonMIT05 2

cellmaps_ppidownloader

Language:PythonMIT05 4

cellmaps_seqms_ppi_gen

Language:PythonMIT000

cellmaps_vnn

Language:PythonMIT06 6

cookiecutter-musicpypackage

Language:PythonBSD-3-Clause050

hicomp

Language:PythonMIT050

ndex-edge-filter4Hiview

An edge filtering service for Hiview.

Language:JavaMIT030