Add module for Pathway enrichment analysis with ClusterProfiler (Over representation test, ORA)
grst opened this issue · comments
Input:
- DE genes
- Database (e.g. KEGG, Reactome, ...)
Output:
- Table
- Plot
The module should take the database as an input channel such that the pipeline can run the processes in parallel for all databases.
Section in old code:
https://github.com/icbi-lab/deseq2icbi/blob/28e54a75598d39b70090376daa0e9ddefee25363/runDESeq2_ICBI.R#L294-L400