icbi-lab / nf-deseq2

A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.

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Add module for Biotype QC

grst opened this issue · comments

Add a module that produces a table with differentially expressed genes by biotype.

Input:

  • GTF file
  • List of DE genes

Output:

  • Table
  • Plot

Section in the old code:
https://github.com/icbi-lab/deseq2icbi/blob/28e54a75598d39b70090376daa0e9ddefee25363/runDESeq2_ICBI.R#L249-L267