Add module for Progeny
grst opened this issue · comments
Progeny is a method for detecting enrichment of cancer pathways based on gene signatures
Input:
- sample sheet
- gene expression matrix
Output:
- Plot
- Table
I'm not sure if Progeny does proper statistical tests by group. If not, perform a simple statistical test, e.g. using a linear model.
Since it does not make sense to run Progeny on all datasets, this should be made optional (e.g. params.run_dorothea) and
be disabled by default.