Giters

icbi-lab / nf-deseq2

A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Add module for volcano plots

grst opened this issue · comments

commented

Add a module that creates volcano plots based on the DE result

Input:

  • DE genes
  • Optional: genes of interest to highlight in the plot

Output:

  • Plots

Section in old script:
https://github.com/icbi-lab/deseq2icbi/blob/28e54a75598d39b70090376daa0e9ddefee25363/runDESeq2_ICBI.R#L494-L544