icbi-lab / nf-deseq2

A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.

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Add module for PCA

grst opened this issue · comments

Add a module that generates a 2-dimensional PCA plot of the samples.

Input:

  • gene expression matrix
  • sample sheet

Ouput:

  • plot

Section in old code:
https://github.com/icbi-lab/deseq2icbi/blob/28e54a75598d39b70090376daa0e9ddefee25363/runDESeq2_ICBI.R#L481-L491

Closed via #25