icbi-lab / infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Home Page:https://infercnvpy.readthedocs.io/en/latest/

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Are we able to use output of infercnvpy for drawing phylogenetic trees?

tingxie2020 opened this issue · comments

Description of feature

Such as drawing phylogenetic tree by uphyloplot2?
Thank you!

Hi, the uphyloplot2 package looks interesting. In principle, it should be possible to calculate a dendrogram using infercnvpy and run it through uphyloplot2 for plotting.

I currently don't have the time to pursue this though, but if you try it out, let me know how it goes and consider sending a pull request!