icbi-lab / infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Home Page:https://infercnvpy.readthedocs.io/en/latest/

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CopyKAT - got an unexpected keyword argument 'norm_cell_names'

sandrav-CGEN opened this issue · comments

Hi,

thanks for the nice work!
I am trying to use the copyKAT function with the parameter 'norm_cell_names'.
I receive the error message: "got an unexpected keyword argument 'norm_cell_names'" (see screenshot).
Anyone might have experienced the same problem?
image

Are you sure you have the latest version of infercnvpy? The norm_cell_name was added only in the latest v0.3 release a few days ago.

Also, it should probably be a list of cells, rather than a single identifier.

Thank you! Missed that :) Great this feature was added.
Solved the problem.