icbi-lab / infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Home Page:https://infercnvpy.readthedocs.io/en/latest/

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provided out is the wrong size for the reduction

chsher opened this issue · comments

I am trying to run the infercnv function on an anndata object and am receiving an error message: "provided out is the wrong size for the reduction" --
image

Looks like it is fixed by converting obs_col to numpy array with obs_col.values.