Bhoom Suktitipat's repositories
azure-redcap-paas
Automated deployment of REDCap with Azure Blob storage as the storage back-end
datasharing
The Leek group guide to data sharing
Developing_Data_Products
Developing Data Products Course from the Johns Hopkins Data Science Lab
gatk4-exome-analysis-pipeline
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
github_rstudio
Demonstration of RStudio Project Creation and Github Repository Creation for Reproducible Research
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
imputationserver
TOPMED Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
pathscan
An easy to use tool to identify pathogenic variants in genomic data; identifies variants listed as pathogenic in ClinVar that the ACMG recommendation implies should be incidental, reportable findings from VCFs, Complete Genomics variant files, and 23andMe SNP reports.
redcap-docker
Dockerfile for building REDCap a secure web application for building and managing online surveys and databases. http://www.project-redcap.org/
redcap-docker-compose
A docker-compose script for building REDCap with Mailhog
REDCap-Hooks
This is a framework for deploying hooks in REDCap on a global or per-project basis.
redcap_data_dictionary
Shared REDCap Data Dictionary
seq-format-conversion
Workflows for converting between sequence data formats
surviving-singularity
Singularity Survival Guide
terms_conditions
Repository for Accepted Terms and Conditions from Various Companies
training-data-analyst
Labs and demos for courses for GCP Training (http://cloud.google.com/training).