Pete's repositories
Windows-jekyll-install
Draft of Jekyll install on Windows 10
cloud-genomics
Cloud Genomics lesson
Helpful_scripts_and_things
Scripts to get through issues with various software (usually formatting)
R-genomics
Lesson on data analysis and visualization in R for genomics
Lacto_genome
Progress on the Lactococcus strain PrHT3
nextera-rapid-capture
An automated method for the Nextera Rapid Capture kit on the Agilent NGS Workstation (Option B)
nextera-xt
An automated method for the Nextera XT kit on the Agilent NGS Workstation (Option B)
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
shell-genomics
Lesson for the shell for genomics
swc-pr-tutorial
Tutorial on how to make a pull request to a Carpentries lesson
swc_github_flow
Instructions for contributing the to free and open source materials for teaching foundational computational and data science skills to researchers maintained by The Carpentries at https://software-carpentry.org/lessons/ and http://www.datacarpentry.org/lessons/
SWCarpentryCribSheets
instructor notes from Software Carpentry workshops
transfer-protocols
Automated protocols for sample picking and normalisation for the Agilent NGS workstation
truseq-nano
The TruSeq Nano library preparation automated on the Agilent NGS workstation
truseq-stranded-mrna
An automated method for the TruSeq Stranded mRNA kit on the Agilent NGS Workstation (Option B)
truseq-total-rna
The RiboZero part of the TruSeq total RNA protocol automated on the Agilent NGS workstation.