CP2K build fails

Question

CP2K build fails

hfp opened this issue 4 years ago · comments

刘乐雨 · Answer 1 · Mon Sep 28 2020 21:31:15 GMT+0800 (China Standard Time)

Hi,
I have installed cp2k-7.1 successfully using xconfigure when I implied __NO_IPI_DRIVER in my arch file, but I get one test failed when i do "make ARCH=Linux-x86-64-intelx VERSION=popt test":

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/home/liuly/opt/cp2k-7.1/regtesting/Linux-x86-64-intelx/popt/TEST-Linux-x86-64-intelx-popt-2020-09-28_20-34-08/QS/regtest-ri-mp2/opt_basis_O_auto_gen.inp.out
eps_taylor : 0.10000E-15 max_taylor : 4
----------------------------------- OT ---------------------------------------

Step Update method Time Convergence Total energy Change

 1 OT CG       0.80E-01    0.3     0.02365643       -15.6427980750 -1.56E+01
 2 OT LS       0.32E+00    0.2                      -15.6460782008
 3 OT CG       0.32E+00    0.2     0.01262754       -15.6533694192 -1.06E-02
 4 OT LS       0.79E+00    0.1                      -15.6565454346
 5 OT CG       0.79E+00    0.2     0.00467350       -15.6582921032 -4.92E-03
 6 OT LS       0.81E+00    0.1                      -15.6589842819
 7 OT CG       0.81E+00    0.2     0.00110702       -15.6589847767 -6.93E-04
 8 OT LS       0.72E+00    0.1                      -15.6590183185
 9 OT CG       0.72E+00    0.2     0.00029918       -15.6590189647 -3.42E-05
10 OT LS       0.91E+00    0.1                      -15.6590219971
11 OT CG       0.91E+00    0.2     0.00009876       -15.6590221427 -3.18E-06
12 OT LS       0.73E+00    0.1                      -15.6590224017
13 OT CG       0.73E+00    0.2     0.00003168       -15.6590224193 -2.77E-07
14 OT LS       0.73E+00    0.1                      -15.6590224481
15 OT CG       0.73E+00    0.2     0.00000778       -15.6590224481 -2.88E-08
16 OT LS       0.78E+00    0.1                      -15.6590224499
17 OT CG       0.78E+00    0.2     0.00000125       -15.6590224499 -1.84E-09
18 OT LS       0.98E+00    0.1                      -15.6590224500
19 OT CG       0.98E+00    0.2     0.00000065       -15.6590224500 -5.97E-11

*** SCF run converged in 19 steps ***

Electronic density on regular grids: -5.9999976402 0.0000023598
Core density on regular grids: 6.0000000001 0.0000000001
Total charge density on r-space grids: 0.0000023598
Total charge density g-space grids: 0.0000023598

Overlap energy of the core charge distribution: 0.00000000000000
Self energy of the core charge distribution: -41.19899268745614
Core Hamiltonian energy: 11.60018684694388
Hartree energy: 17.13897389160868
Exchange-correlation energy: 0.00000000000000
Hartree-Fock Exchange energy: -3.19919050105590

Total energy: -15.65902244995949

outer SCF iter = 1 RMS gradient = 0.65E-06 energy = -15.6590224500
outer SCF loop converged in 1 iterations or 19 steps

Integrated absolute spin density : 2.0211945195
Ideal and single determinant S**2 : 2.000000 2.006475

MP2 section

Used number of processes per group: 1
Maximum allowed memory usage per MPI processes: 1024.00 MiB
Available memory per MPI process for MP2: 853.00 MiB

Optimization of the auxiliary RI-MP2 basis

forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
cp2k.popt 0000000010C1E1FD Unknown Unknown Unknown
libpthread-2.17.s 00002B4E5DC5E6D0 Unknown Unknown Unknown
cp2k.popt 00000000018090EC Unknown Unknown Unknown
cp2k.popt 00000000017F2B0A Unknown Unknown Unknown
cp2k.popt 00000000014E9B94 Unknown Unknown Unknown
cp2k.popt 0000000000B8464D Unknown Unknown Unknown
cp2k.popt 0000000000A66A35 Unknown Unknown Unknown
cp2k.popt 0000000000A52E53 Unknown Unknown Unknown
cp2k.popt 00000000009D00AF Unknown Unknown Unknown
cp2k.popt 000000000041449C Unknown Unknown Unknown
cp2k.popt 000000000040A792 Unknown Unknown Unknown
cp2k.popt 0000000000409F1E Unknown Unknown Unknown
libc-2.17.so 00002B4E5FAF0445 __libc_start_main Unknown Unknown
cp2k.popt 0000000000409E29 Unknown Unknown Unknown
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
cp2k.popt 0000000010C1E2A3 Unknown Unknown Unknown
libpthread-2.17.s 00002B4E5DC5E6D0 Unknown Unknown Unknown
libiomp5.so 00002B4E5D8AEDBB Unknown Unknown Unknown
libiomp5.so 00002B4E5D91A800 Unknown Unknown Unknown
libiomp5.so 00002B4E5D921720 Unknown Unknown Unknown
ld-2.17.so 00002B4E5D6581E8 Unknown Unknown Unknown
libc-2.17.so 00002B4E5FB07BD9 Unknown Unknown Unknown
libc-2.17.so 00002B4E5FB07C27 Unknown Unknown Unknown
cp2k.popt 0000000010C12F5C Unknown Unknown Unknown
cp2k.popt 0000000010C1E1FD Unknown Unknown Unknown
libpthread-2.17.s 00002B4E5DC5E6D0 Unknown Unknown Unknown
cp2k.popt 00000000018090EC Unknown Unknown Unknown
cp2k.popt 00000000017F2B0A Unknown Unknown Unknown
cp2k.popt 00000000014E9B94 Unknown Unknown Unknown
cp2k.popt 0000000000B8464D Unknown Unknown Unknown
cp2k.popt 0000000000A66A35 Unknown Unknown Unknown
cp2k.popt 0000000000A52E53 Unknown Unknown Unknown
cp2k.popt 00000000009D00AF Unknown Unknown Unknown
cp2k.popt 000000000041449C Unknown Unknown Unknown
cp2k.popt 000000000040A792 Unknown Unknown Unknown
cp2k.popt 0000000000409F1E Unknown Unknown Unknown
libc-2.17.so 00002B4E5FAF0445 __libc_start_main Unknown Unknown
cp2k.popt 0000000000409E29 Unknown Unknown Unknown
EXIT CODE: 174 MEANING: RUNTIME FAIL
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regtesting location summary file: /home/liuly/opt/cp2k-7.1/regtesting/Linux-x86-64-intelx/popt/TEST-Linux-x86-64-intelx-popt-2020-09-28_20-34-08/summary.txt
regtesting location error_summary file: /home/liuly/opt/cp2k-7.1/regtesting/Linux-x86-64-intelx/popt/TEST-Linux-x86-64-intelx-popt-2020-09-28_20-34-08/error_summary
regtesting location memory_summary file: /home/liuly/opt/cp2k-7.1/regtesting/Linux-x86-64-intelx/popt/TEST-Linux-x86-64-intelx-popt-2020-09-28_20-34-08/memory_summary
regtesting location output dir: /home/liuly/opt/cp2k-7.1/regtesting/Linux-x86-64-intelx/popt/TEST-Linux-x86-64-intelx-popt-2020-09-28_20-34-08
regtesting location last dir: /home/liuly/opt/cp2k-7.1/regtesting/Linux-x86-64-intelx/popt/LAST-Linux-x86-64-intelx-popt
--------------------------------- Timings --------------------------------
Plot: name="timings", title="Timing Distribution", ylabel="time [s]"
PlotPoint: name="100th_percentile", plot="timings", label="100th %ile", y=88.69, yerr=0.0
PlotPoint: name="99th_percentile", plot="timings", label="99th %ile", y=21.518, yerr=0.0
PlotPoint: name="98th_percentile", plot="timings", label="98th %ile", y=15.5952, yerr=0.0
PlotPoint: name="95th_percentile", plot="timings", label="95th %ile", y=9.035, yerr=0.0
PlotPoint: name="90th_percentile", plot="timings", label="90th %ile", y=5.672, yerr=0.0
PlotPoint: name="80th_percentile", plot="timings", label="80th %ile", y=3.09, yerr=0.0
--------------------------------- Summary --------------------------------
Number of FAILED tests 1
Number of WRONG tests 0
Number of CORRECT tests 3266
Number of NEW tests 8
Total number of tests 3275
GREPME 1 0 3266 8 3275 X

Summary: correct: 3266 / 3275; new: 8; failed: 1; 9min
Status: FAILED

Regtest took 559.00 seconds.

Mon Sep 28 20:43:26 CST 2020
*************************** testing ended ********************************

error_summary.log

does it mean there still some errors in my compilation?
By the way, I also want to ask if I can compile cp2k-7.1 with plumed when using xconfigure and intel compiler? if it can be done, what should I do? I have tried to just add the following lines to "Linux-x86-64-intelx.arch" produced by xconfigure,
"include /path/to/your/plumed2.0/installation/lib/plumed/src/lib/Plumed.inc
EXTERNAL_OBJECTS=$(PLUMED_STATIC_DEPENDENCIES)
DFLAGS += -D__PLUMED2
LIBS += -lz -ldl -lstdc++"

but it failed in the compilation process:

/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x21029a): undefined reference to gsl_vector_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2102b6): undefined reference to gsl_vector_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2102c8): undefined reference to gsl_vector_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2102d7): undefined reference to gsl_vector_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2102e6): undefined reference to gsl_vector_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210307): undefined reference to gsl_matrix_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210326): undefined reference to gsl_matrix_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x21033a): undefined reference to gsl_matrix_alloc'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210347): undefined reference to gsl_matrix_set_zero'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x21034f): undefined reference to gsl_vector_set_zero'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210474): undefined reference to gsl_vector_set'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210481): undefined reference to gsl_matrix_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2104b8): undefined reference to gsl_matrix_set'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2104c8): undefined reference to gsl_matrix_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2104f3): undefined reference to gsl_matrix_set'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210503): undefined reference to gsl_matrix_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210534): undefined reference to gsl_matrix_set'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210544): undefined reference to gsl_matrix_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210564): undefined reference to gsl_matrix_set'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210574): undefined reference to gsl_matrix_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x21059b): undefined reference to gsl_matrix_set'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210649): undefined reference to gsl_matrix_memcpy'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x21066b): undefined reference to gsl_linalg_SV_decomp'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210683): undefined reference to gsl_linalg_SV_solve'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2106d9): undefined reference to gsl_vector_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x21073b): undefined reference to gsl_vector_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210817): undefined reference to gsl_vector_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210873): undefined reference to gsl_vector_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x2108d7): undefined reference to gsl_vector_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x21090d): undefined reference to gsl_blas_dgemv'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210963): undefined reference to gsl_vector_get'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a24): undefined reference to gsl_matrix_free'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a2e): undefined reference to gsl_matrix_free'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a38): undefined reference to gsl_matrix_free'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a42): undefined reference to gsl_vector_free'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a4c): undefined reference to gsl_vector_free'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a56): undefined reference to gsl_vector_free'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a60): undefined reference to gsl_vector_free'
/home/liuly/opt/plumed/lib/plumed/obj/kernel.o: In function PLMD::isdb::RDC::do_svd()': (.text+0x210a6a): undefined reference to gsl_vector_free'
make[3]: *** [/home/liuly/opt/cp2k-7.1/exe/Linux-x86-64-intelx/graph.popt] Error 1
make[3]: *** Waiting for unfinished jobs....
^Z
[2]+ Stopped make ARCH=Linux-x86-64-intelx VERSION=popt AVX=3 LIBINTROOT=/home/liuly/opt/libint/intel-skx LIBXCROOT=/home/liuly/opt/libxc/intel-skx ELPAROOT=/home/liuly/opt/elpa/intel-skx-omp -j 24

Could you give me some suggestions about the above questions?
Thanks!

Hans Pabst · Answer 2 · Fri Oct 02 2020 04:04:26 GMT+0800 (China Standard Time)

The updated ARCH files fixed the Regtest error(s). I am now getting 0 errors for PSMP and POPT when running CP2K 7.1 Regtests (Intel Compiler 2020u2). The issue was about relaxed/increased opt-level for more recent Intel Fortran Compiler, however, it is generally more stable to rely on -O2 (regardless of the compiler version). Please redo ./configure-get.sh cp2k within your CP2K-7.1 root-directory.

Regarding a well-performing executable, I recommend GCC, LIBXSMM, and MKL since performance-critical code is covered by libraries (at least wrt CP2K 7.1). I further recommend PSMP over POPT at least for scale-out. Regarding the latter, you may want to have a look at https://xconfigure.readthedocs.io/cp2k/plan/ which contains perhaps useful information regardless of whether your workload is scale-out or emphasizes the "square-number property".

Regarding Plumed, I have to add recipes for this library. Are you depending on Plumed functionality in CP2K?
CP2K 7.1 was the first release with Plumed (if I remember correctly).

刘乐雨 · Answer 3 · Mon Oct 05 2020 10:09:45 GMT+0800 (China Standard Time)

Thank you for your kind reply! I have passed all the tests successfully this time!

Yes, I want to do constrained molecular dynamics calculations depending on Plumed, but I don't how to install it using xconfigure, so you mean Plumed has been integrated to CP2K7.1 and I don't need to install/compile it by myself?

Thanks！

Hans Pabst · Answer 4 · Tue Oct 06 2020 16:34:25 GMT+0800 (China Standard Time)

so you mean Plumed has been integrated to CP2K7.1 and I don't need to install/compile it by myself?

Just ignore my previous comment. I have now added Plumed2 support to XCONFIGURE and updated the step-by-step guide for building CP2K. I am currently testing the Plumed support for both Intel Compiler and GNU Compiler as well as for CP2K/master, CP2K 6.1, and CP2K 7.1. Tests are still in progress, and I will close this issue when they are successfully completed. You need to build Plumed using the new recipe as well as updating the ARCH files (./configure-get.sh cp2k) and then rebuild CP2K (rm -rf exe lib obj, etc).

Hans Pabst · Answer 5 · Tue Oct 06 2020 18:40:15 GMT+0800 (China Standard Time)

Hold off testing it yet, there are problems with the current recipe (missing support for MPI, FFTW, etc.).

刘乐雨 · Answer 6 · Tue Oct 06 2020 20:28:35 GMT+0800 (China Standard Time)

OK, I see!
By the way, when I installed plumed-2.6.1 following your step-by-step guide for building CP2K, I got the following errors:

creating build/lib.linux-x86_64-3.7
g++ -pthread -shared -B /opt/intel/2020u2/intelpython3/compiler_compat -L/opt/intel/2020u2/intelpy thon3/lib -Wl,-rpath=/opt/intel/2020u2/intelpython3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/t emp.linux-x86_64-3.7/plumed.o -o build/lib.linux-x86_64-3.7/plumed.cpython-37m-x86_64-linux-gnu.so
/bin/ld: this linker was not configured to use sysroots
collect2: error: ld returned 1 exit status
error: command 'g++' failed with exit status 1
make[1]: *** [all] Error 1
make[1]: Leaving directory `/home/liuly/opt/plumed2-2.6.1/python'
make: *** [all] Error 2

the intel compiler 2020u2 has been used in the installation, do you know the reason about this error?

Thanks very much!

Hans Pabst · Answer 7 · Tue Oct 06 2020 20:51:46 GMT+0800 (China Standard Time)

As said, the recipes were not ready. Your g++ (above log) also indicates this was not the Intel variant of the configure wrapper script.

Now, the current status at GitHub (from an hour ago) seems to be good. I fixed potentially all missing features and CP2K/master regtests with Plumed passed (GNU Compiler). I am currently building CP2K 7.1 (built with Intel Compiler) and soon/hopefully starting the regtests soon.

Hans Pabst · Answer 8 · Tue Oct 06 2020 20:59:48 GMT+0800 (China Standard Time)

CP2K 7.1 built with Intel Compiler and Plumed passed all regtests. I believe the whole thing is now ready.

刘乐雨 · Answer 9 · Tue Oct 06 2020 21:42:24 GMT+0800 (China Standard Time)

I have tried to install Plumed again, however, I got the same error :

creating build/lib.linux-x86_64-3.7
g++ -pthread -shared -B /opt/intel/2020u2/intelpython3/compiler_compat -L/opt/intel/2020u2/intelpython3/lib -Wl,-rpath=/opt/intel/2020u2/intelpython3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/plumed.o -o build/lib.linux-x86_64-3.7/plumed.cpython-37m-x86_64-linux-gnu.so
/bin/ld: this linker was not configured to use sysroots
collect2: error: ld returned 1 exit status
error: command 'g++' failed with exit status 1
make[1]: *** [all] Error 1
make[1]: Leaving directory `/home/liuly/opt/plumed2-2.6.1/python'
make: *** [all] Error 2

it is very strange, could you give me some suggestions about this error?

Hans Pabst · Answer 10 · Tue Oct 06 2020 21:48:22 GMT+0800 (China Standard Time)

Do you made Intel Compiler available on your command line? When did this happen, I mean which step? Was it when you built Plumed2?

刘乐雨 · Answer 11 · Tue Oct 06 2020 21:56:05 GMT+0800 (China Standard Time)

Yes, I made Intel Compiler available on my command line,.
When i do"make -j" during Plumed compilation , I got this error.

Hans Pabst · Answer 12 · Fri Oct 09 2020 17:16:40 GMT+0800 (China Standard Time)

I cannot help much with this other than pointing out the steps again:

make distclean
./configure-get.sh plumed
./configure-plumed-skx.sh
make -j; make install

You may use "hsw" (or even "snb") rather than "skx" depending on your target system/hardware. The non-gnu variants of the above script attempt to use Intel Compiler, given your log ([...] g++ -pthread -shared -B /opt/intel/2020u2/intelpython3/compiler_compat -L/opt/intel/2020u2/intelpython3/lib -Wl,-rpath=/opt/intel/2020u2/intelpython3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/plumed.o -o build/lib.linux-x86_64-3.7/plumed.cpython-37m-x86_64-linux-gnu.so [...]), it looks like using the GNU Compiler (g++) and also attempts to build the shared library variant of Plumed2. The latter is disabled in my current configure-wrapper scripts. So, your log/error looks suspicious to me. As a reminder, you should have pulled the latest configure-wrapper scripts before you build Plumed2 (./configure-get.sh plumed).

刘乐雨 · Answer 13 · Fri Oct 09 2020 17:43:20 GMT+0800 (China Standard Time)

When I change the intel compiler from 2020u2 to 2018u4, the Plumed-2.6.1 can be installed/compiled successfully with xconfigure, however, the installation of libint-v2.6.0-cp2k-lmax-6 fails finally:

make: *** [src/HRRPart0bra0ket0hg001.lo] Error 1 icpc: error #10106: Fatal error in /home/liuly/intel/compilers_and_libraries_2018.5.274/linux/bin/intel64/mcpcom, terminated by kill signal compilation aborted for src/HRRPart0bra0ket0if.cc (code 1) make: *** Waiting for unfinished jobs.... icpc: error #10106: Fatal error in /home/liuly/intel/compilers_and_libraries_2018.5.274/linux/bin/intel64/mcpcom, terminated by kill signal compilation aborted for src/HRRPart0bra0ket0if010.cc (code 1) make: *** [src/HRRPart0bra0ket0if001.lo] Error 1 make: *** [src/HRRPart0bra0ket0md.lo] Error 1 icpc: error #10106: Fatal error in /home/liuly/intel/compilers_and_libraries_2018.5.274/linux/bin/intel64/mcpcom, terminated by kill signal compilation aborted for src/HRRPart0bra0ket0i100f.cc (code 1) icpc: error #10106: Fatal error in /home/liuly/intel/compilers_and_libraries_2018.5.274/linux/bin/intel64/mcpcom, terminated by kill signal compilation aborted for src/HRRPart0bra0ket0hg100.cc (code 1) make: *** [src/HRRPart0bra0ket0hg010.lo] Error 1 icpc: error #10106: Fatal error in /home/liuly/intel/compilers_and_libraries_2018.5.274/linux/bin/intel64/mcpcom, terminated by kill signal compilation aborted for src/HRRPart0ket0bra0md.cc (code 1) make: *** [src/HRRPart0bra0ket0h010g.lo] Error 1 make: *** [src/HRRPart0bra0ket0h100g.lo] Error 1 make: *** [src/HRRPart0bra0ket0i010f.lo] Error 1 make: *** [src/HRRPart0bra0ket0i100f.lo] Error 1 make: *** [src/HRRPart0bra0ket0ld100.lo] Error 1 make: *** [src/HRRPart0bra0ket0lf.lo] Error 1
sorry to bother you again!
thanks very much!

刘乐雨 · Answer 14 · Sat Oct 10 2020 12:02:00 GMT+0800 (China Standard Time)

Hi,
I have installed the CP2K-7.1 with Plumed following your guide successfully in another new device/system, Maybe there are some unknown problem in my current system, I will continue to pay attention to this problem and if I find the solutions, I will share it immediately!

Thank you for all your hard work and kind help these days!

Best,
Leyu Liu

Hans Pabst · Answer 15 · Sun Oct 11 2020 01:12:54 GMT+0800 (China Standard Time)

@Liuly98 Thank you for letting me know! Feel free to log any issue you run into!

Thank you also for requesting Plumed2 support in XCONFIGUREd CP2K. This is certainly useful for others as well.